Parameter autotuning

First, thank you for the great software!

I saw that the autotuning feature

seems to have dissappeared after version 0.8.X.
At least, that’s the last version that I found a tutorial for
https://docs.scvi-tools.org/en/0.8.1/user_guide/autotune.html
I also saw that an alternative is in active development

which makes me think that the older version is gone.

I tried to run the tutorial above using 0.10.X and 0.7.X of scVI, but get
"
ModuleNotFoundError: No module named ‘scvi.inference’
"
on import statements at the beginning which makes me think things have moved around
since the tutorial was written.

Is there currently a way to run autotuning?

Unfortunately there is not a currently supported way to run autotune. In the next few weeks, the version in development will be more stable. This version uses Ray tune and will be more straightforward to use.

Thank you for the quick reply!

I’ll roll my own then.
Looking forward to the new autotuner!

A big thank you for scvi-tools!
I’m curious what the current status is on Ray tune - is it still in development?
Thanks!

Slowly still in development. You can see the PR we have up. It’s mostly wrapping Ray tune.

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