Hi, many thanks for your great tool!
I tried using the seed labeling on the Tusi 2018 data and their marker genes from Supp table 1. I followed strictly your tutorial (Seed labeling with scANVI — scvi-tools) and the first results look promising. However, I would like to get the posterior probability score which you used in your original publication (e.g. Figure 6 D).
On that note, is there a implemented way to dismiss labels if they have no support based on the trained model?
Is it possible to extract it from the model? I tried dir(scvi.model._scanvi.SCANVI) but could not find.