Scanvi best practices

Hi,

I’ve been reviewing the latest changes in SCANVI. I noted the removal of pretraining scvi and that the option to do pretraining was moved to the from_scvi_model() method.

Could you elaborate on whether it is still best practice to pretrain with scvi, or whether just using scanvi on its own is better?

Thanks
Charlotte

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It is still best practice to pretrain a SCVI model and then instantiate SCANVI with the from_scvi_model class method. We moved this around for API reasons.

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Thanks for the quick response!

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