I have very simple configuration problem that I am in the process of googling and troubleshooting. I have installed scVI-tools via conda as shown here Installation — scvi-tools
conda create -n scvi-env python=3.7 source activate scvi-env conda install scvi-tools -c bioconda -c conda-forge
and scVI works fine. BUT it says there is no GPU available. I am currently going through separate PyTorch documents to see if I need some additional config. The issue is almost certainly my config and not related to scVI directly. However, since everyone here has experience setting this up, I figured it wouldnt hurt to ask in this forum about any troubleshooting steps you might know that I as a new scVI user might be missing.
Thanks in advance for any tips or tricks! I will update this thread as I try different things I find via google.