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About the scanpy category
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0
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477
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March 4, 2022
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Computing sc.pp.neighbors without method?
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2
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268
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April 25, 2024
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How can I logarithmize the data for wilcoxon test?
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1
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24
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April 25, 2024
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Does processing the data always overwrite the raw counts?
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3
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1432
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April 22, 2024
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Question about diffusion map "gaussian" implementation
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2
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193
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April 19, 2024
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How to interpret Diffusion Maps?
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0
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43
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April 18, 2024
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How can I export list of genes and counts for each cluster from adata.raw?
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1
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88
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April 12, 2024
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Change the font family for scanpy.pl in linux
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1
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51
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April 11, 2024
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TCR and BCR genes and HVGs selection
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5
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92
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April 3, 2024
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Differential expression genes: test to use?
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0
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72
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April 2, 2024
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Leiden clustering gives me different results when I run it
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1
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93
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April 1, 2024
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Does Scanpy stores raw count as int or float?
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1
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83
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March 25, 2024
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Sc.pl.draw_graph
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1
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101
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March 19, 2024
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Normalized data found instead of raw counts
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2
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165
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March 18, 2024
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Sc.pl.draw_graph is strongly affected by the outliers
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0
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61
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March 18, 2024
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How to reuse cmap for other plots?
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3
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103
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March 9, 2024
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How to get dot values from `sc.pl.dotplot()`?
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1
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154
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March 1, 2024
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Remove genes from highly variable genes
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1
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193
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February 21, 2024
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Converting tab-delimited files to adata in a memory-efficient way
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3
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99
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February 21, 2024
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ModuleNotFoundErrror: no module named "importlib.metadata"
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4
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671
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February 15, 2024
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Error with cyclone ['DataFrame' object has no attribute 'iteritems' ]
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0
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106
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February 12, 2024
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Subsetting/Re-normalization issue
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0
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109
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February 5, 2024
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Plots shifted when using scanpy in R markdown
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0
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60
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February 1, 2024
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Trying to read custom genome using sc.read_10x_h5
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0
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111
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January 26, 2024
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Heatmap cannot be assigned as a subplot
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1
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152
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January 16, 2024
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Umap shapes different for the same dataset
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1
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114
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January 15, 2024
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Mismatch between MAST DE results and dotplot
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0
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70
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January 9, 2024
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Pl.dotplot : legend(mean expression in group) number is so large
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1
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233
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January 9, 2024
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Option to plot separate umaps for concatenated datasets
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4
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228
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December 27, 2023
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Weird oval umap cluster
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0
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115
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December 25, 2023
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