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Batch correction using scvI on multiple datasets + hyperparameter tuning of an scvI model
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1
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127
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February 16, 2024
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Running totalVI by batch
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1
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82
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February 16, 2024
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Failure to remove a batch_key/ effect of number of LVs
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6
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183
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February 9, 2024
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Scvi and subtyping
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1
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154
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February 9, 2024
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SCVI tools with large datasets
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2
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219
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February 9, 2024
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How to save intermediate checkpoints?
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3
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291
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February 3, 2024
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Using a model with categorical_covariate_key instead of batch_key
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2
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186
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February 1, 2024
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GIMVI, label specification for single cell and spatial data
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0
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106
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January 28, 2024
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Preparing data for training of a classifier while preserving biological signal
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0
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93
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January 27, 2024
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Label Transfer Discrepancy in scANVI Model Training
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2
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145
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January 22, 2024
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Differential expression and rarely expressed genes
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1
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133
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January 20, 2024
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Encountering Error in Label Transfer : Query Dataset Slightly Larger than Reference Dataset
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3
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103
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January 11, 2024
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scVI dropout, need for it?
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2
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141
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January 10, 2024
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Attribute Error while training simplescvi on tutorial lung data. Differences to full scvi?
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2
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113
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January 9, 2024
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Adding cycle consistency loss and VampPrior to scVI
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2
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94
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January 9, 2024
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Denoising/remove ambient RNA with scAR then scvi modeling?
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3
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166
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January 6, 2024
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Interpretation and visualization of MrVI output?
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1
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135
|
January 6, 2024
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Clustering on the scVI latent space generates only gray-colored cells
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4
|
148
|
December 24, 2023
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Kernel dies when training simple SCVI on mac m3
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1
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148
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December 20, 2023
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How to use normalised expression
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0
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169
|
December 19, 2023
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MultiVI error on only paired data
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3
|
284
|
December 19, 2023
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Predicting of unassigned cells using scANVI
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0
|
132
|
December 10, 2023
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Error running ModelTuner.fit
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|
5
|
347
|
December 8, 2023
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scVI integration with all genes
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0
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192
|
December 5, 2023
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Suggestion on parameters for training scvi model
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3
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453
|
December 4, 2023
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scPoli implementation in dcvi-tools
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2
|
101
|
December 1, 2023
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When mutli-gpu support is planned on scanvi?
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3
|
162
|
December 1, 2023
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Nested batch effects with scvi
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|
3
|
163
|
November 29, 2023
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Scvi for developmental data
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|
4
|
143
|
November 29, 2023
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Compatibility between scVI and SCENIC
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|
10
|
394
|
November 28, 2023
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