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AttributeError: module 'jax' has no attribute 'Device'
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9
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3429
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January 31, 2024
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Problem with airr data loading
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11
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374
|
October 3, 2023
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Compatibility between scVI and SCENIC
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10
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394
|
November 28, 2023
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Incorporating augmentations (per batch) for scVI training
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11
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210
|
February 28, 2024
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Using my own datasets with spatialData
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9
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104
|
February 8, 2024
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Current status of dask support (and on disk sparse arrays)
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1
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397
|
May 25, 2023
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Error when draw UMAP: object has no attribute 'get_cmap'
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4
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2277
|
September 5, 2023
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Anndata 0.10 released!
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0
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528
|
October 9, 2023
|
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Understanding the GPU related warning while setting up SCVI
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1
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2080
|
May 10, 2023
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How to concatenate spatial AnnData objects
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4
|
632
|
August 15, 2023
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How to interpret the latent space in scVI
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6
|
406
|
March 5, 2024
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Enviroment.yml file? scvi installation problems
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8
|
591
|
October 11, 2023
|
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AttributeError: 'DataSplitter' object has no attribute '_has_setup_TrainerFn.FITTING'
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4
|
788
|
June 16, 2023
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|
ModuleNotFoundErrror: no module named "importlib.metadata"
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4
|
671
|
February 15, 2024
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Error when saving adata with adata.write_h5ad(): "Above error raised while writing key 'names' of to /"
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2
|
998
|
December 3, 2023
|
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I want to draw dendrogram on both x and y axes in scanpy's sc.pl .dotplot
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0
|
347
|
May 9, 2023
|
|
Using categorical_covariate_keys when sampling or generating normalised expression
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6
|
704
|
June 26, 2023
|
|
Imaging data from seurat to scanpy
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1
|
639
|
October 4, 2023
|
|
Import scvi error
|
|
0
|
280
|
July 25, 2023
|
|
Error message cannot import name 'set_verbosity' from 'scvi._settings' when importing scvi
|
|
6
|
669
|
October 9, 2023
|
|
Error when training model on M3 Max MPS
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5
|
547
|
February 16, 2024
|
|
Interpreting scirpy's ir_dist_aa_alignment distances
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|
1
|
185
|
August 22, 2023
|
|
Visium normalization best practices
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2
|
393
|
November 28, 2023
|
|
Different DEG results after loading .h5ad
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|
0
|
214
|
August 19, 2023
|
|
New core members
|
|
0
|
230
|
June 16, 2023
|
|
SOLO/scVI .train() error related to batch_size?
|
|
3
|
641
|
April 3, 2024
|
|
Cell-Cell Interactions
|
|
0
|
223
|
July 5, 2023
|
|
scVI integration using two batch keys
|
|
5
|
483
|
October 24, 2023
|
|
Batch correction using scvI on multiple datasets + hyperparameter tuning of an scvI model
|
|
1
|
128
|
February 16, 2024
|
|
Unexpected Effect of Augmentations on scVI Batch Integration
|
|
0
|
237
|
March 2, 2024
|
|
Increase scVI integration speed
|
|
5
|
454
|
October 24, 2023
|
|
Differential expression analysis
|
|
2
|
350
|
August 17, 2023
|
|
.SOLO.from_scvi_model() throwing AttributeError
|
|
2
|
717
|
May 3, 2023
|
|
Spatial Segment TypeError
|
|
1
|
478
|
May 24, 2023
|
|
MultiVI error on only paired data
|
|
3
|
285
|
December 19, 2023
|
|
CITEsq loading in RNA and ADT data
|
|
4
|
512
|
July 6, 2023
|
|
Community Meeting 2024-02-20
|
|
0
|
191
|
February 13, 2024
|
|
Option to plot separate umaps for concatenated datasets
|
|
4
|
228
|
December 27, 2023
|
|
Converting view of a backed anndata object into non-view/non-backed
|
|
2
|
166
|
January 16, 2024
|
|
Setting num_workers in DataLoader for improving train performance
|
|
2
|
496
|
November 21, 2023
|
|
Macbook M1 M2 mps acceleration with scVI
|
|
4
|
448
|
February 16, 2024
|
|
How to install solo-sc or use hashsolo from scvi?
|
|
4
|
451
|
September 11, 2023
|
|
Suggestion on parameters for training scvi model
|
|
3
|
456
|
December 4, 2023
|
|
Error with import scvi
|
|
2
|
495
|
September 7, 2023
|
|
Spatialdata status
|
|
2
|
287
|
May 16, 2023
|
|
Reloading saved model gives different results
|
|
7
|
181
|
February 20, 2024
|
|
Problem in PerformanceWarning
|
|
1
|
631
|
June 30, 2023
|
|
Increase number of CPU cores for vae.train() in scvi?
|
|
3
|
464
|
August 28, 2023
|
|
Integration of Multiple Multiome Datasets
|
|
5
|
378
|
March 6, 2024
|
|
Loading an scVI model from a pytorch lightning checkpoint
|
|
3
|
498
|
August 29, 2023
|